r3dmol - Create Interactive 3D Visualizations of Molecular Data

Create rich and fully interactive 3D visualizations of molecular data. Visualizations can be included in Shiny apps and R markdown documents, or viewed from the R console and 'RStudio' Viewer. 'r3dmol' includes an extensive API to manipulate the visualization after creation, and supports getting data out of the visualization into R. Based on the '3dmol.js' and the 'htmlwidgets' R package.

Last updated 1 years ago

3dcomputational-biologycomputational-chemistryhacktoberfesthtmlwidgetsmolecular-graphicsmolecular-modelingproteinprotein-structurevisualization

6.23 score 88 stars 1 packages 130 scripts 388 downloads

figpatch - Easily Arrange External Figures with Patchwork Alongside 'ggplot2' Figures

For including external figures into an assembled {patchwork}. This enables the creation of more complex figures that include images alongside plots.

Last updated 2 years ago

alignmentggplot2patchworkrmarkdown

5.30 score 75 stars 53 scripts 289 downloads

crosshap - Local Haplotype Clustering and Visualization

A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.

Last updated 18 days ago

4.56 score 12 stars 4 scripts 292 downloads

plasmapR - Create Plasmid Maps in R

Create circular plasmid maps as ggplot objects. Allows for parsing of .gb files and the creation of plasmid maps. Features allowing for customisation of aesthetics, like regular ggplot plots.

Last updated 1 years ago

3.60 score 80 stars 4 scripts

wellr - Utilities for Working With Plate Based Data

Provides a range of utility functions for working with plate-based data from microtitre plates such as enzyme assays, bacterial growth assays and protein binding experiments. Working with column IDs, row numbers and letters and transforming between a matrix and a data frame are all made simpler.

Last updated 8 months ago

96-well-platebiochemistry

2.00 score 1 stars 6 scripts

reluxr - Deconvolute Luminescence Readings on Bacterial Culture Plates

Implements the deconvolution algorithm developed in Mauri, Vecchione, and Fritz (2019) which enables deconvolution of luminscence readings for experimental culture plates. {reluxr} provides functions for calculating the 'best' deconvolution matrix from a calibration plate, and enables usage of this calibration matrix (or one calculated previously) to adjust experimental values from a plate reader.

Last updated 2 years ago

plate-readersynthetic-biology

2.00 score 2 stars

standard - Simplified Fitting and Use of Standard Curves

{standard} provices a more simplified interface to the linear models system in R for the fitting of standard curves and their usage in biochemistry and molecular biology.

Last updated 1 years ago

1.98 score 19 scripts

chromr - Read and Plot FPLC Chromatograms

For reading files from BioRad QuadTec machines and making plots of the charomatograms.

Last updated 2 years ago

chromatographyggplot2

1.70 score