Package: plasmapR 0.3.1

Brady Johnston
plasmapR: Create Plasmid Maps in R
Create circular plasmid maps as ggplot objects. Allows for parsing of .gb files and the creation of plasmid maps. Features allowing for customisation of aesthetics, like regular ggplot plots.
Authors:
plasmapR_0.3.1.tar.gz
plasmapR_0.3.1.zip(r-4.7)plasmapR_0.3.1.zip(r-4.6)plasmapR_0.3.1.zip(r-4.5)
plasmapR_0.3.1.tgz(r-4.6-any)plasmapR_0.3.1.tgz(r-4.5-any)
plasmapR_0.3.1.tar.gz(r-4.7-any)plasmapR_0.3.1.tar.gz(r-4.6-any)
plasmapR_0.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
plasmapR/json (API)
| # Install 'plasmapR' in R: |
| install.packages('plasmapR', repos = c('https://bradyajohnston.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bradyajohnston/plasmapr/issues
Pkgdown/docs site:https://bradyajohnston.github.io
Last updated from:2d3930dbab. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 135 | ||
| source / vignettes | OK | 180 | ||
| linux-release-x86_64 | OK | 133 | ||
| macos-release-arm64 | OK | 133 | ||
| macos-oldrel-arm64 | OK | 175 | ||
| windows-devel | OK | 109 | ||
| windows-release | OK | 127 | ||
| windows-oldrel | OK | 73 | ||
| wasm-release | OK | 120 |
Exports:plot_plasmidread_gbstat_arrowStatArrowStatArrowLabel
Dependencies:bitbit64clicliprcommonmarkcpp11crayoncurlfarverggfittextggplot2ggrepelgluegridtextgtablehmsisobandjpeglabelinglifecyclelitedownmagrittrmarkdownpillarpkgconfigpngprettyunitsprogressR6RColorBrewerRcppreadrrlangS7scalesshadesstringistringrtibbletidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract Features of a Plasmid as a DataFrame | as.data.frame.plasmid |
| Plot a Plasmid | plot_plasmid |
| Read a '.gb' GenBank File | read_gb |
| Custom Stat: Arrow | stat_arrow |
| Compute positions for an Arrow | StatArrow |
| Compute required values for labels | StatArrowLabel |