Package: plasmapR 0.3.1
plasmapR: Create Plasmid Maps in R
Create circular plasmid maps as ggplot objects. Allows for parsing of .gb files and the creation of plasmid maps. Features allowing for customisation of aesthetics, like regular ggplot plots.
Authors:
plasmapR_0.3.1.tar.gz
plasmapR_0.3.1.zip(r-4.5)plasmapR_0.3.1.zip(r-4.4)plasmapR_0.3.1.zip(r-4.3)
plasmapR_0.3.1.tgz(r-4.5-any)plasmapR_0.3.1.tgz(r-4.4-any)plasmapR_0.3.1.tgz(r-4.3-any)
plasmapR_0.3.1.tar.gz(r-4.5-noble)plasmapR_0.3.1.tar.gz(r-4.4-noble)
plasmapR_0.3.1.tgz(r-4.4-emscripten)plasmapR_0.3.1.tgz(r-4.3-emscripten)
plasmapR.pdf |plasmapR.html✨
plasmapR/json (API)
# Install 'plasmapR' in R: |
install.packages('plasmapR', repos = c('https://bradyajohnston.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bradyajohnston/plasmapr/issues
Last updated 2 years agofrom:244ab7cee2. Checks:3 OK, 5 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 20 2025 |
R-4.5-win | NOTE | Feb 20 2025 |
R-4.5-mac | NOTE | Feb 20 2025 |
R-4.5-linux | NOTE | Feb 20 2025 |
R-4.4-win | NOTE | Feb 20 2025 |
R-4.4-mac | NOTE | Feb 20 2025 |
R-4.3-win | OK | Feb 20 2025 |
R-4.3-mac | OK | Feb 20 2025 |
Exports:plot_plasmidread_gbStatArrowStatArrowLabel
Dependencies:bitbit64clicliprcolorspacecommonmarkcpp11crayoncurlfansifarverggfittextggplot2ggrepelgluegridtextgtablehmsisobandjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigpngprettyunitsprogressR6RColorBrewerRcppreadrrlangscalesshadesstringistringrtibbletidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxml2
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Extract Features of a Plasmid as a DataFrame | as.data.frame.plasmid |
Plot a Plasmid | plot_plasmid |
Read a '.gb' GenBank File | read_gb |
Compute positions for an Arrow | StatArrow |
Compute required values for labels | StatArrowLabel |