Package: reluxr 0.1.1
reluxr: Deconvolute Luminescence Readings on Bacterial Culture Plates
Implements the deconvolution algorithm developed in Mauri, Vecchione, and Fritz (2019) which enables deconvolution of luminscence readings for experimental culture plates. {reluxr} provides functions for calculating the 'best' deconvolution matrix from a calibration plate, and enables usage of this calibration matrix (or one calculated previously) to adjust experimental values from a plate reader.
Authors:
reluxr_0.1.1.tar.gz
reluxr_0.1.1.zip(r-4.5)reluxr_0.1.1.zip(r-4.4)reluxr_0.1.1.zip(r-4.3)
reluxr_0.1.1.tgz(r-4.4-any)reluxr_0.1.1.tgz(r-4.3-any)
reluxr_0.1.1.tar.gz(r-4.5-noble)reluxr_0.1.1.tar.gz(r-4.4-noble)
reluxr_0.1.1.tgz(r-4.4-emscripten)reluxr_0.1.1.tgz(r-4.3-emscripten)
reluxr.pdf |reluxr.html✨
reluxr/json (API)
# Install 'reluxr' in R: |
install.packages('reluxr', repos = c('https://bradyajohnston.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bradyajohnston/reluxr/issues
Last updated 2 years agofrom:dcc567456a. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 15 2024 |
R-4.5-win | OK | Oct 15 2024 |
R-4.5-linux | OK | Oct 15 2024 |
R-4.4-win | OK | Oct 15 2024 |
R-4.4-mac | OK | Oct 15 2024 |
R-4.3-win | OK | Oct 15 2024 |
R-4.3-mac | OK | Oct 15 2024 |
Exports:is_well_idplate_read_tecanrl_adjust_platerl_calc_decon_matrixrl_plot_plate
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtablehmsisobandjanitorlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalessnakecasestringistringrtibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Deconvolute a Single Vector | .decon_vec |
Deconvolute a Multi-Frame Matrix | .deconvolute_multi_frame_matrix |
Calculate Bleed Through Matrix | .mat_calc_bleed |
Make Deconvolution Matrix From Bleed-Through Matrix | .mat_calc_deconvolution |
Create a multi-frame matrix from a dataframe. | .multi_frame_matrix_from_df |
Convert a Multi-Frame Matrix to a Vector | .multi_frame_matrix_to_vec |
Reorder a DatFrame | df_arrange |
Logical test for well ID format. | is_well_id |
Read the output of Tecan Plate Readers | plate_read_tecan |
Adjust Experimental Luminescent Data | rl_adjust_plate |
Calculate a Deconvolution Matrix | rl_calc_decon_matrix |
Calculate the Optimal Deconvolution Matrix | rl_mat_decon_best |
Plot a Plate-Layout of the Value Column | rl_plot_plate |