Setup | Exporting your data from MO.Affinity Analysis | Reading data | Looking at the traces | Calculating Fnorm | Fitting a binding curve | Plotting dose-response curves | Comparing curves with fraction bound | Making your own plots | Saving results | Using MO.Affinity Analysis's own results | Reading project files
Package: tidymst 0.1.0
tidymst: Read and Analyse NanoTemper Microscale Thermophoresis Exports
Read the Excel exports written by NanoTemper's MO.Affinity Analysis software (MST traces, capillary scans, dose-response and fit results) into tidy data frames, and analyse them: recompute normalised fluorescence (Fnorm) from traces, fit Kd and Hill binding models, and convert responses to delta Fnorm or fraction bound.
Authors:
tidymst_0.1.0.tar.gz
tidymst_0.1.0.zip(r-4.7-any)tidymst_0.1.0.zip(r-4.6-any)tidymst_0.1.0.zip(r-4.5-any)
tidymst_0.1.0.tgz(r-4.6-any)tidymst_0.1.0.tgz(r-4.5-any)
tidymst_0.1.0.tar.gz(r-4.7-any)tidymst_0.1.0.tar.gz(r-4.6-any)
tidymst_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tidymst/json (API)
| # Install 'tidymst' in R: |
| install.packages('tidymst', repos = c('https://bradyajohnston.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bradyajohnston/tidymst/issues
Pkgdown/docs site:https://bradyajohnston.github.io
Last updated from:1713a90959. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 172 | ||
| source / vignettes | OK | 186 | ||
| linux-release | OK | 143 | ||
| macos-release | OK | 159 | ||
| macos-oldrel | OK | 193 | ||
| windows-devel | OK | 104 | ||
| windows-release | OK | 122 | ||
| windows-oldrel | OK | 87 | ||
| wasm-release | OK | 101 |
Exports:mst_coefsmst_curvemst_export_typemst_fitmst_fnormmst_normalisemst_plot_dose_responsemst_plot_tracesread_mstread_mst_capillary_scanread_mst_dose_responseread_mst_fitread_mst_fit_curveread_mst_metadataread_mst_tracestidymst_example
Dependencies:bitbit64blobcachemcellrangerclicpp11crayonDBIdplyrfastmapgenericsgluehmslifecyclemagrittrmemoisepillarpkgconfigprettyunitsprogressR6readxlrematchrlangRSQLitetibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get fitted model coefficients | mst_coefs |
| Predict fitted binding curves | mst_curve |
| Detect the type of a MO.Affinity Analysis export | mst_export_type |
| Fit binding models to dose-response data | mst_fit |
| Calculate normalised fluorescence from MST traces | mst_fnorm |
| Normalise responses to delta Fnorm and fraction bound | mst_normalise |
| Plot dose-response curves | mst_plot_dose_response |
| Plot MST traces | mst_plot_traces |
| Read a MO.Affinity Analysis export | read_mst |
| Read capillary scans | read_mst_capillary_scan |
| Read dose-response data | read_mst_dose_response |
| Read binding fits | read_mst_fit |
| Read fitted binding curves | read_mst_fit_curve |
| Read export metadata | read_mst_metadata |
| Read MST traces | read_mst_traces |
| Get paths to example exports | tidymst_example |