Package: crosshap Type: Package Title: Local Haplotype Clustering and Visualization Version: 1.4.0 Authors@R: c(person(given = "Jacob", family = "Marsh", role = c("aut", "cre"), email = "jake.marsh@live.com.au", comment = c(ORCID = "0000-0003-3734-2023")), person(given = "Brady", family = "Johnston", role = "aut", email = "brady.johnston@me.com", comment = c(ORCID = "0000-0001-6301-2269")), person(given = "Jakob", family = "Petereit", role = "aut", email = "petinho86@gmail.com", comment = c(ORCID = "0000-0003-2159-0380")) ) Maintainer: Jacob Marsh Description: A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) . Encoding: UTF-8 LazyData: true LazyDataCompression: xz RoxygenNote: 7.2.3 Imports: cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0), umap, vdiffr Depends: R (>= 4.00) URL: https://jacobimarsh.github.io/crosshap/ BugReports: https://github.com/jacobimarsh/crosshap/issues License: MIT + file LICENSE Config/testthat/edition: 3 Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev libicu-dev libxml2-dev Repository: https://bradyajohnston.r-universe.dev Date/Publication: 2024-11-04 21:55:47 UTC RemoteUrl: https://github.com/jacobimarsh/crosshap RemoteRef: HEAD RemoteSha: c31a82bb8d5bbaff0aecc5a66db0a3a7795e5f9d NeedsCompilation: no Packaged: 2026-09-21 09:41:11 UTC; root Author: Jacob Marsh [aut, cre] (ORCID: ), Brady Johnston [aut] (ORCID: ), Jakob Petereit [aut] (ORCID: )