{
  "_id": "6a1024b4acfb0bcc41c8def4",
  "Package": "r3dmol",
  "Title": "Create Interactive 3D Visualizations of Molecular Data",
  "Version": "0.2.0",
  "Authors@R": "c(person(given = \"Wei\",\nfamily = \"Su\",\nrole = c(\"aut\", \"cre\"),\nemail = \"swsoyee@gmail.com\",\ncomment = c(ORCID = \"0000-0002-9302-5332\")),\nperson(given = \"Brady\",\nfamily = \"Johnston\",\nrole = \"aut\",\nemail = \"brady.johnston@me.com\",\ncomment = c(ORCID = \"0000-0001-6301-2269\")))",
  "Maintainer": "Wei Su <swsoyee@gmail.com>",
  "Description": "Create rich and fully interactive 3D visualizations of\nmolecular data. Visualizations can be included in Shiny apps\nand R markdown documents, or viewed from the R console and\n'RStudio' Viewer. 'r3dmol' includes an extensive API to\nmanipulate the visualization after creation, and supports\ngetting data out of the visualization into R. Based on the\n'3dmol.js' and the 'htmlwidgets' R package.",
  "License": "BSD_3_clause + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.2.1",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/swsoyee/r3dmol",
  "BugReports": "https://github.com/swsoyee/r3dmol/issues",
  "Repository": "https://bradyajohnston.r-universe.dev",
  "Date/Publication": "2023-10-25 08:33:37 UTC",
  "RemoteUrl": "https://github.com/swsoyee/r3dmol",
  "RemoteRef": "HEAD",
  "RemoteSha": "0eefc1c2c430fff0122ae71ae8c9cc4e8912190c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 09:54:49 UTC",
    "User": "root"
  },
  "Author": "Wei Su [aut, cre] (ORCID: <https://orcid.org/0000-0002-9302-5332>),\nBrady Johnston [aut] (ORCID: <https://orcid.org/0000-0001-6301-2269>)",
  "MD5sum": "fbe50c5c533c27c097b3f5d88223d9ad",
  "_user": "bradyajohnston",
  "_type": "src",
  "_file": "r3dmol_0.2.0.tar.gz",
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  "_filesize": 1115382,
  "_sha256": "e046767df391ee9ba3122adb6b3e987e07d75fffd6ff3af9d6c6131027f6b3bb",
  "_created": "2026-05-13T09:54:49.000Z",
  "_published": "2026-05-22T09:41:08.348Z",
  "_distro": "noble",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/bradyajohnston/actions/runs/25791653904",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/swsoyee/r3dmol",
  "_commit": {
    "id": "0eefc1c2c430fff0122ae71ae8c9cc4e8912190c",
    "author": "InfinityLoop <swsoyee@gmail.com>",
    "committer": "InfinityLoop <swsoyee@gmail.com>",
    "message": "build: update deps\n",
    "time": 1698222817
  },
  "_maintainer": {
    "name": "Wei Su",
    "email": "swsoyee@gmail.com",
    "login": "swsoyee",
    "twitter": "@swsoyee",
    "uuid": 20528423,
    "orcid": "0000-0002-9302-5332"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "htmlwidgets",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "bio3d",
      "role": "Imports"
    },
    {
      "package": "rjson",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "shiny",
      "role": "Suggests"
    },
    {
      "package": "colourpicker",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "swsoyee",
  "_selfowned": false,
  "_usedby": 2,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "3d",
    "computational-biology",
    "computational-chemistry",
    "hacktoberfest",
    "htmlwidgets",
    "molecular-graphics",
    "molecular-modeling",
    "protein",
    "protein-structure",
    "visualization"
  ],
  "_stars": 100,
  "_contributors": [
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      "user": "swsoyee",
      "count": 294,
      "uuid": 20528423
    },
    {
      "user": "bradyajohnston",
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      "uuid": 36021261
    }
  ],
  "_userbio": {
    "uuid": 36021261,
    "type": "user",
    "name": "Brady Johnston",
    "description": "Structural biologist interested in compelling visualisations of complex biological data."
  },
  "_downloads": {
    "count": 485,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/r3dmol"
  },
  "_devurl": "https://github.com/swsoyee/r3dmol",
  "_searchresults": 419,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/r3dmol.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/swsoyee/r3dmol",
  "_realowner": "swsoyee",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2020-10-26"
    },
    {
      "version": "0.1.1",
      "date": "2021-02-15"
    },
    {
      "version": "0.1.2",
      "date": "2021-03-14"
    }
  ],
  "_exports": [
    "%>%",
    "m_add_arrow",
    "m_add_as_one_molecule",
    "m_add_box",
    "m_add_curve",
    "m_add_custom",
    "m_add_cylinder",
    "m_add_isosurface",
    "m_add_label",
    "m_add_line",
    "m_add_model",
    "m_add_models",
    "m_add_models_as_frames",
    "m_add_outline",
    "m_add_property_labels",
    "m_add_res_labels",
    "m_add_shape",
    "m_add_sphere",
    "m_add_style",
    "m_add_surface",
    "m_add_unit_cell",
    "m_animate",
    "m_bio3d",
    "m_button_add_res_labels",
    "m_button_add_style",
    "m_button_add_surface",
    "m_button_animate",
    "m_button_manual",
    "m_button_set_style",
    "m_button_spin",
    "m_button_zoom_to",
    "m_center",
    "m_clear",
    "m_create_model_from",
    "m_enable_fog",
    "m_fetch_pdb",
    "m_get_model",
    "m_glimpse",
    "m_grid",
    "m_is_animated",
    "m_multi_resi_sel",
    "m_png",
    "m_remove_all_labels",
    "m_remove_all_models",
    "m_remove_all_shapes",
    "m_remove_all_surfaces",
    "m_remove_label",
    "m_remove_unit_cell",
    "m_render",
    "m_replicate_unit_cell",
    "m_rotate",
    "m_sel",
    "m_set_background_color",
    "m_set_color_by_element",
    "m_set_default_cartoon_quality",
    "m_set_height",
    "m_set_hover_duration",
    "m_set_preceived_distance",
    "m_set_projection",
    "m_set_slab",
    "m_set_style",
    "m_set_view",
    "m_set_width",
    "m_set_zoom_limits",
    "m_shape_spec",
    "m_shiny_demo",
    "m_spin",
    "m_stop_animate",
    "m_style_ballnstick",
    "m_style_cartoon",
    "m_style_label",
    "m_style_line",
    "m_style_sphere",
    "m_style_stick",
    "m_style_surface",
    "m_translate",
    "m_translate_scene",
    "m_vector3",
    "m_vibrate",
    "m_viewer_spec",
    "m_zoom",
    "m_zoom_to",
    "r3dmol",
    "r3dmolOutput",
    "renderR3dmol"
  ],
  "_datasets": [
    {
      "name": "cif_254385",
      "title": "Cif file example",
      "object": "cif_254385",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "cube_benzene_homo",
      "title": "Gaussian cube file example",
      "object": "cube_benzene_homo",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pdb_1j72",
      "title": "Crystal Structure of Mutant Macrophage Capping Protein (Cap G) with Actin-severing Activity in the Ca2+-Free Form in PDB format",
      "object": "pdb_1j72",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "pdb_6zsl",
      "title": "Crystal structure of the SARS-CoV-2 helicase at 1.94 Angstrom resolution in PDB format",
      "object": "pdb_6zsl",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "sdf_multiple",
      "title": "Multiple sdf file example",
      "object": "sdf_multiple",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "xyz_multiple",
      "title": "Multiple xyz file example",
      "object": "xyz_multiple",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cif_254385",
      "title": "Cif file example",
      "topics": [
        "cif_254385"
      ]
    },
    {
      "page": "cube_benzene_homo",
      "title": "Gaussian cube file example",
      "topics": [
        "cube_benzene_homo"
      ]
    },
    {
      "page": "init",
      "title": "Initialise a WebGL-based viewer",
      "topics": [
        "init",
        "r3dmol"
      ]
    },
    {
      "page": "m_add_arrow",
      "title": "Add arrow shape",
      "topics": [
        "m_add_arrow"
      ]
    },
    {
      "page": "m_add_as_one_molecule",
      "title": "Create and add model to viewer",
      "topics": [
        "m_add_as_one_molecule"
      ]
    },
    {
      "page": "m_add_anyShape",
      "title": "Create and add shape",
      "topics": [
        "m_add_anyShape",
        "m_add_box",
        "m_add_curve"
      ]
    },
    {
      "page": "m_add_custom",
      "title": "Add custom shape component from user supplied function",
      "topics": [
        "m_add_custom"
      ]
    },
    {
      "page": "m_add_cylinder",
      "title": "Add Cylinder Between Points",
      "topics": [
        "m_add_cylinder"
      ]
    },
    {
      "page": "m_add_isosurface",
      "title": "Construct isosurface from volumetric data in gaussian cube format",
      "topics": [
        "m_add_isosurface"
      ]
    },
    {
      "page": "m_add_label",
      "title": "Add label to viewer",
      "topics": [
        "m_add_label"
      ]
    },
    {
      "page": "m_add_line",
      "title": "Add Lines Between Points",
      "topics": [
        "m_add_line"
      ]
    },
    {
      "page": "add_model",
      "title": "Create and add model to viewer",
      "topics": [
        "add_model",
        "m_add_model",
        "m_add_models"
      ]
    },
    {
      "page": "m_add_models_as_frames",
      "title": "Create and add model to viewer",
      "topics": [
        "m_add_models_as_frames"
      ]
    },
    {
      "page": "m_add_outline",
      "title": "Add colored outline to all objects in scene.",
      "topics": [
        "m_add_outline"
      ]
    },
    {
      "page": "m_add_property_labels",
      "title": "Add property labels",
      "topics": [
        "m_add_property_labels"
      ]
    },
    {
      "page": "m_add_res_labels",
      "title": "Add Residue Labels",
      "topics": [
        "m_add_res_labels"
      ]
    },
    {
      "page": "m_add_shape",
      "title": "Add shape object to viewer",
      "topics": [
        "m_add_shape"
      ]
    },
    {
      "page": "m_add_sphere",
      "title": "Add Sphere Shape",
      "topics": [
        "m_add_sphere"
      ]
    },
    {
      "page": "m_add_style",
      "title": "Add Style to Selection",
      "topics": [
        "m_add_style"
      ]
    },
    {
      "page": "m_add_surface",
      "title": "Add surface representation to atoms",
      "topics": [
        "m_add_surface"
      ]
    },
    {
      "page": "m_unit_cell",
      "title": "Unit cell visualization",
      "topics": [
        "m_add_unit_cell",
        "m_remove_unit_cell",
        "m_replicate_unit_cell",
        "m_unit_cell"
      ]
    },
    {
      "page": "m_animate",
      "title": "Animate all models in viewer from their respective frames",
      "topics": [
        "m_animate"
      ]
    },
    {
      "page": "m_bio3d",
      "title": "Load structure from package bio3d",
      "topics": [
        "m_bio3d"
      ]
    },
    {
      "page": "m_button_add_res_labels",
      "title": "Add a button for adding residue labels",
      "topics": [
        "m_button_add_res_labels"
      ]
    },
    {
      "page": "m_button_add_style",
      "title": "Add button for Adding a Style",
      "topics": [
        "m_button_add_style"
      ]
    },
    {
      "page": "m_button_add_surface",
      "title": "Add a button for adding a surface",
      "topics": [
        "m_button_add_surface"
      ]
    },
    {
      "page": "m_button_animate",
      "title": "Add a button for starting and stopping animations",
      "topics": [
        "m_button_animate"
      ]
    },
    {
      "page": "m_button_manual",
      "title": "Add button into viewer",
      "topics": [
        "m_button_manual"
      ]
    },
    {
      "page": "m_button_set_style",
      "title": "Add a button for overwriting a style",
      "topics": [
        "m_button_set_style"
      ]
    },
    {
      "page": "m_button_spin",
      "title": "Add a button for spinning the scene",
      "topics": [
        "m_button_spin"
      ]
    },
    {
      "page": "m_button_zoom_to",
      "title": "Add a button for zooming to a selection",
      "topics": [
        "m_button_zoom_to"
      ]
    },
    {
      "page": "m_center",
      "title": "Re-center the viewer around the provided selection",
      "topics": [
        "m_center"
      ]
    },
    {
      "page": "m_clear",
      "title": "Clear scene of all objects",
      "topics": [
        "m_clear"
      ]
    },
    {
      "page": "m_enable_fog",
      "title": "Enable/disable fog for content far from the camera",
      "topics": [
        "m_enable_fog"
      ]
    },
    {
      "page": "m_fetch_pdb",
      "title": "Fetch Structure from PDB",
      "topics": [
        "m_fetch_pdb"
      ]
    },
    {
      "page": "m_glimpse",
      "title": "Quickly View Given Structure",
      "topics": [
        "m_glimpse"
      ]
    },
    {
      "page": "m_grid",
      "title": "Create a grid of viewers that share a WebGL canvas",
      "topics": [
        "m_grid"
      ]
    },
    {
      "page": "m_multi_resi_sel",
      "title": "Selection Across Multiple Residues",
      "topics": [
        "m_multi_resi_sel"
      ]
    },
    {
      "page": "m_png",
      "title": "Convert widgets to PNG image",
      "topics": [
        "m_png"
      ]
    },
    {
      "page": "m_remove_all_labels",
      "title": "Remove all labels from viewer",
      "topics": [
        "m_remove_all_labels"
      ]
    },
    {
      "page": "m_remove_all_models",
      "title": "Delete all existing models",
      "topics": [
        "m_remove_all_models"
      ]
    },
    {
      "page": "m_remove_all_shapes",
      "title": "Remove all shape objects from viewer",
      "topics": [
        "m_remove_all_shapes"
      ]
    },
    {
      "page": "m_remove_all_surfaces",
      "title": "Remove all labels from viewer",
      "topics": [
        "m_remove_all_surfaces"
      ]
    },
    {
      "page": "m_remove_label",
      "title": "Remove label from viewer",
      "topics": [
        "m_remove_label"
      ]
    },
    {
      "page": "m_render",
      "title": "Render current state of viewer",
      "topics": [
        "m_render"
      ]
    },
    {
      "page": "m_rotate",
      "title": "Rotate scene by angle degrees around axis",
      "topics": [
        "m_rotate"
      ]
    },
    {
      "page": "m_sel",
      "title": "Selection Function for r3dmol",
      "topics": [
        "m_sel"
      ]
    },
    {
      "page": "m_set_color_by_element",
      "title": "Set color by element",
      "topics": [
        "m_set_color_by_element"
      ]
    },
    {
      "page": "m_set_default_cartoon_quality",
      "title": "Set the default cartoon quality for newly created models",
      "topics": [
        "m_set_default_cartoon_quality"
      ]
    },
    {
      "page": "m_set_hover_duration",
      "title": "Set the duration of the hover delay",
      "topics": [
        "m_set_hover_duration"
      ]
    },
    {
      "page": "m_set_preceived_distance",
      "title": "Set the distance between the model and the camera",
      "topics": [
        "m_set_preceived_distance"
      ]
    },
    {
      "page": "m_set_projection",
      "title": "Set view projection scheme",
      "topics": [
        "m_set_projection"
      ]
    },
    {
      "page": "m_set_slab",
      "title": "Set slab of view",
      "topics": [
        "m_set_slab"
      ]
    },
    {
      "page": "m_set_style",
      "title": "Overwrite Previous Style",
      "topics": [
        "m_set_style"
      ]
    },
    {
      "page": "m_set_view",
      "title": "Sets the view to the specified translation, zoom, rotation and style",
      "topics": [
        "m_set_view"
      ]
    },
    {
      "page": "m_set_viewer",
      "title": "Set viewer properties",
      "topics": [
        "m_set_background_color",
        "m_set_height",
        "m_set_viewer",
        "m_set_width"
      ]
    },
    {
      "page": "m_set_zoom_limits",
      "title": "Set lower and upper limit stops for zoom",
      "topics": [
        "m_set_zoom_limits"
      ]
    },
    {
      "page": "m_shape_spec",
      "title": "Specify Styling for Generic Shapes",
      "topics": [
        "m_shape_spec"
      ]
    },
    {
      "page": "m_shiny_demo",
      "title": "Run examples of using 'r3dmol' in a Shiny app",
      "topics": [
        "m_shiny_demo"
      ]
    },
    {
      "page": "m_spin",
      "title": "Continuously rotate a scene around the specified axis",
      "topics": [
        "m_spin"
      ]
    },
    {
      "page": "m_stop_animate",
      "title": "Stop animation of all models in viewer",
      "topics": [
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